Overall information
FSDB ID
PM1V0032
Type
-1 frameshifting
Data
PREDICTED
Kingdom
viruses
Definition
Chicken astrovirus, complete genome. 6927 bp ss-RNA linear VRL 30-MAR-2006
Resource
[1]
predicted by FSFinder
[2]
Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A. J Virol. 2000 Sep;74(18):8487-93.
Nucleic acid sequence
NC_003790
Amino acid sequence
Graphical view
3016
TAAGTC
AAAAAAC
TAAATG
AGCCCCCTTCGGGGGGCT
Stop codons
TAA (
3016
),
Slippery sequence
AAAAAAC
(3022 - 3028)
Spacer
TAAATG (6 nt)
Stimulatory structure
AGCCCCCTTCGGGGGGCT
(3035 - 3052)
PREDICTED STRUCTURE
Predicted by
pknotsRG
with the minimum energy option
Visualized by
PseudoViewer
Model
-1 frameshift signal
FSFinder parameters
Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene
genes in viruses
Sequence type
Patial genome
Direction
+ strand
Pattern
Pattern
Match
Exceptions
AAA UUU
spacer
nt
RNA structure
Stem
Pseudoknot
- Stem1
<
- Stem2
<
- Loop1
<
- Loop2
<
- Loop3
<