Overall information
FSDB ID PM1V0032 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Chicken astrovirus, complete genome. 6927 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Imada T, Yamaguchi S, Mase M, Tsukamoto K, Kubo M, Morooka A. J Virol. 2000 Sep;74(18):8487-93.
Nucleic acid sequence NC_003790
Amino acid sequence
Graphical view

3016
TAAGTC
AAAAAAC
TAAATG
AGCCCCCTTCGGGGGGCT
Stop codons TAA (3016),
Slippery sequence
AAAAAAC (3022 - 3028)
Spacer TAAATG (6 nt)
Stimulatory structure
AGCCCCCTTCGGGGGGCT (3035 - 3052)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<