Overall information
FSDB ID EM1V0033 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Enterobacteria phage T7, complete genome. 39938 bp DNA linear PHG 14-NOV-2003
Resource [1] Sipley J, Dunn J, Goldman E. Mol Gen Genet. 1991 Dec;230(3):376-84.
[2] Condron BG, Atkins JF, Gesteland RF. J Bacteriol. 1991 Nov;173(21):6998-7003.
[3] Condron BG, Gesteland RF, Atkins JF. Nucleic Acids Res. 1991 Oct 25;19(20):5607-12.
[4] Gabashvili IS, Khan SA, Hayes SJ, Serwer P. J Mol Biol. 1997 Oct 31;273(3):658-67.
[5] Dunn JJ, Studier FW. J Mol Biol. 1983 Jun 5;166(4):477-535.
Nucleic acid sequence AY264774
Amino acid sequence
gene
10A
CDS Click for details
Graphical view

23936
TAAGTACGCAATGGGCCACGGTGGTCTTCGCCCAGAAGCTGCTGGTGCAGT
GGTTTTC
AAAG
TGGAGTAATGCTGGGGGTGGCCTCAACGGTCGCTGCTAGTCCCGAAGAGGCGAGTGTTACTTCAACAGAAGAAACCTTAACGCCAGC
Stop codons TAA (23936),
Slippery sequence
GGTTTTC (23987 - 23993)
Spacer AAAG (4 nt)
Stimulatory structure
TGGAGTAATGCTGGGGGTGGCCTCAACGGTCGCTGCTAGTCCCGAAGAGGCGAGTGTTACTTCAACAGAAGAAACCTTAACGCCAGC (23998 - 24084)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<