Overall information
FSDB ID PM1V0075 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bacteriophage phiKO2 virion, complete genome. 51601 bp DNA linear PHG 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_005857
Amino acid sequence
gene 
8490..9097
/locus_tag="phiKO2p13"
/db_xref="GeneID:2777904"
CDS Click for details
Graphical view

8807
TAAGGTGAAACGCCACTCCATCGGGACGCTGGAGGAAGCGGA
AAAAAAC
TAAATGA
CTCGCCCTGGCTGGAGCTGATTTTCTGGCTGGCCGACCGCTGGGGCGAG
Stop codons TAA (8807),
Slippery sequence
AAAAAAC (8849 - 8855)
Spacer TAAATGA (7 nt)
Stimulatory structure
CTCGCCCTGGCTGGAGCTGATTTTCTGGCTGGCCGACCGCTGGGGCGAG (8863 - 8911)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene other genes in bacteria
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<