Overall information
FSDB ID EM1V0014 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Potato leaf roll virus genomic RNA. 5882 bp RNA linear VRL 17-NOV-2004
Resource [1] van der Wilk F, Huisman MJ, Cornelissen BJ, Huttinga H, Goldbach R. FEBS Lett. 1989 Mar 13;245(1-2):51-6.
[2] ten Dam EB, Pleij CW, Bosch L. Virus Genes. 1990 Jul;4(2):121-36.
Nucleic acid sequence Y07496
Amino acid sequence
CDS Click for details
CDS Click for details
Graphical view

1537
TGAGGATTACGGTCTGGAGAAAGAGGCTGCAACAAATGCGCCCGCAGAGAAAACTGCTCAAACAAACTCAGCAGAGAAGACTGCTCCATCAACTTCAGCAGAGAAAACTGCTCCAACAAACAAGCC
TTTAAAT
GGGCGA
GCGGCACCGCCCGCCAAAACAAACGG
Stop codons TGA (1537),
Slippery sequence
TTTAAAT (1663 - 1669)
Spacer GGGCGA (6 nt)
Stimulatory structure
GCGGCACCGCCCGCCAAAACAAACGG (1676 - 1701)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<