| FSDB ID | PP1P0057 | Type | +1 frameshifting | ||
| Data | PREDICTED | Kingdom | prokaryota | ||
| Definition | Treponema denticola ATCC 35405, complete genome. 2843201 bp DNA circular BCT 03-APR-2006 | ||||
| Resource | [1] predicted by FSFinder | ||||
| Nucleic acid sequence | NC_002967 | ||||
| Amino acid sequence | |||||
| gene |
Annotated as "pseudogene" in NCBI but ARFA annotate it as release factor 2. complement(join(2075020..2076075,2076077..2076196)) /gene="prfB" /locus_tag="TDE2046" /note="peptide chain release factor 2, programmed frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to SP:P28367; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020" /pseudo /db_xref="GeneID:2740640" |
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| CDS |
Click for details |
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| Graphical view | |||||||||||||
 
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| Model | +1 prokaryote frameshift signal | |||||||
| FSFinder parameters
Run FSFinder (You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.) |
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| Target gene | prfB gene | |||||||
| Sequence type | Full genome | |||||||
| Direction | - strand | |||||||
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