Overall information
FSDB ID PM1V0033 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Choristoneura fumiferana defective nucleopolyhedrovirus, complete genome. 131160 bp DNA circular VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Lauzon HA, Jamieson PB, Krell PJ, Arif BM. J Gen Virol. 2005 Apr;86(Pt 4):945-61.
Nucleic acid sequence NC_005137
Amino acid sequence
gene
57113..57829
/locus_tag="CFDNVgORF66"
/db_xref="GeneID:2943857"
CDS Click for details
gene
57775..58041
/locus_tag="CFDNVgORF67"
/db_xref="GeneID:2943810"
CDS Click for details
Graphical view

57664
TAGCAGCAGCGTTTCCGAATGCAAAGTGTGTTTTGCAAACGAAAAATCAGTGTG
TTTTTTG
CCGT
GCCGTCATTTGGCCGTGTGCGGTACATGCTCTCCGCGCTGCAAAAAATGCTGCGTGTGCAACGGC
Stop codons TAG (57664),
Slippery sequence
TTTTTTG (57718 - 57724)
Spacer CCGT (4 nt)
Stimulatory structure
GCCGTCATTTGGCCGTGTGCGGTACATGCTCTCCGCGCTGCAAAAAATGCTGCGTGTGCAACGGC (57729 - 57793)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<