Overall information

FSDB ID	EP1E0011	Type	+1 frameshifting
Data	EXPERIMENTAL	Kingdom	eukaryota
Definition	S.cerevisiae genomic DNA, chromosome II from Y element to ILS1 gene. 78600 bp DNA linear PLN 18-APR-2005
Resource	[1] Belcourt MF, Farabaugh PJ. Cell. 1990 Jul 27;62(2):339-52. [2] Burck CL, Chernoff YO, Liu R, Farabaugh PJ, Liebman SW. RNA. 1999 Nov;5(11):1451-7. [3] Stahl G, Salem SN, Chen L, Zhao B, Farabaugh PJ. Eukaryot Cell. 2004 Apr;3(2):331-8.
Nucleic acid sequence		X79489
Amino acid sequence
gene	23968..25284 /gene="YBL0821"
CDS	Click for details 23968..25284 /gene="YBL0821" /note="Ty A" /codon_start=1 /product="A-438 protein" /protein_id="CAA55997.1" /db_xref="GI:496670" /db_xref="InterPro:IPR001042" /db_xref="UniProtKB/TrEMBL:Q12260" /translation="MESQQLHQNPHSLHGSAYASVTSKEVSSNQDPLAVSASNLPEFD RDSTKVNSQQETTPGTSAVPENHHHVSPQPASVPPPQNGQYQQHGMMTPNKAMASNWA HYQQPSMMTCSHYQTSPAYYQPDPHYPLPQYIPPLSTSSPDPIDSQDQHSEVPQAKTK VRNNVLPPHTLTSEENFYTWVKFYIRFLKNSNLGDIIPNDQGEIKRQMTYEEHAYIYN TFQAFAPFHLLPTWVKQILEINYADILTVLCKSVSKMQTNNQELKDWIALANLEYDGS TSADTFEITVSTIIQRLKENNINVSDRLACQLILKGLSGDFKYLRNQYRTKTNMKLSQ LFAEIQLIYDENKIMNLNKPSQYKQHSEYKNVSRTSPNTTNTKVTTRNYHRTNSSKPR AAKAHNIATSSKFSRVNNDHINESTVSSQYLSDDNELSLRPATERI"
gene	25241..29281 /gene="YBL0822"
CDS	Click for details 25241..29281 /gene="YBL0822" /note="Ty B" /codon_start=1 /product="B-1346 protein" /protein_id="CAA55998.1" /db_xref="GI:496671" /db_xref="GOA:Q05679" /db_xref="InterPro:IPR001584" /db_xref="InterPro:IPR001969" /db_xref="UniProtKB/TrEMBL:Q05679" /translation="MTTNLVLGQQQKESKPTHTIDSNDELPDHLLIDSGASQTLVRSA HYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHTPNIAYDLLSLS ELANQNITACFTRNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSHISKLTINNVNKSK SVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTYQCPDCLIGKST KHRHVKGSRLKYQESYEPFQYLHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLH DRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTT ADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSAR QHAGLAGLDITTILPFGQPVIVNNHNPDSKIHPRGIPGYALHPSRNSYGYIIYLPSLK KTVDTTNYVILQDNQSKLDQFNYDTLTFDDDLNRLTAHNQSFIEQNETEQSYDQNTES DHDYQSEIEINSDPLVNDFSSQSMNPLQLDHEPVQKVRALKEVDADISEYNILPSPVR SRTPHIINKESTEMGGTIESDTTSPRHSSTFTARNQKRPGSPNDMIDLTSQDRVNYEL ENIKTTRLGGTEEPYIQRNSDTNIKYRTTNSTPSIDDRSPDSDSTTPIISIETKAACD NTPSIDTDPPEYRSSDHATPNIMPDKSSKNVTADSILDDLPLPDLTNKSPTDTSDVSK DIPHIHSRQTNSSLGGMDDSNVLTTTKSKKRSLEDNETEIEVSRDTWNNKNMRSLEPP RSKKRINLIAAIKGVKSIKPVRTTLRYDEAITYNEDNKEKDRYIEAYHKEINQLLRMN TWDTNKYYDRNDIDPKKVINSMFIFNKKRDGTHKARFVARGDIQHPDTYDSDMQSNTV HHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPHLGLNDKLLRLRKSL YGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNSQVTICLFVDDMILFSKDLNAN EKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSKYMKLGMEKSLTEKLPKLN VPLNPKGKKLSAPGQPGHYIDQDELEIDEDEYKEKVHEMQKLIGLASYVGYKFRFDLL YYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTKPDNKLVAISDASY GNQPYYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSEAIPLLNNLSHLVQ ELNKKPIIKGLLTDSRSTISIIKSTNEEKFRNRFFGTKAMRLRDEVSGNNLYVYYIET KKNIADVMTKPLPIKTFKLLTNKWIH"

Graphical view

25235 TAAGCGATGACAACGAACTTAGT CTTAGGC CAGC AACAGAAAGAATCTAAGCCAACACACACAATAGACTCGAATGACGAACTACCTGATCACCTTCTTATTGATTCAGGAGCTTCGCAAA
Stop codons	TAA (25235),
Slippery sequence	CTTAGGC (25258 - 25264)

Model

+1 eukaryote frameshift signal

FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

genes in viruses

Sequence type

Patial genome

Direction

+ strand

Signal

Match sequences

spacer

nt

RNA structure

Stem Pseudoknot
- Stem1	<
- Stem2	<
- Loop1	<
- Loop2	<
- Loop3	<