Overall information
FSDB ID PM1V0042 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Ovine astrovirus, complete genome. 6440 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Jonassen CM, Jonassen T TO, Sveen TM, Grinde B. Virus Res. 2003 Feb;91(2):195-201.
Nucleic acid sequence NC_002469
Amino acid sequence
gene
46..4100
/locus_tag="OAstVgp1"
/db_xref="GeneID:1449587"
CDS Click for details
Graphical view

2508
TAGGAAGCGTGTCCAGCAGCC
AAAAAAC
TCCAA
AGGGGCCCTGAAGACCCGGGCCCC
Stop codons TAG (2508),
Slippery sequence
AAAAAAC (2529 - 2535)
Spacer TCCAA (5 nt)
Stimulatory structure
AGGGGCCCTGAAGACCCGGGCCCC (2541 - 2564)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<