Overall information
FSDB ID
PP1P0028
Type
+1 frameshifting
Data
PREDICTED
Kingdom
prokaryota
Definition
Listeria monocytogenes secA gene, complete cds. 2905 bp DNA linear BCT 08-OCT-1994
Resource
[1]
Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15.
[2]
Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence
L32090
Amino acid sequence
gene
prfB
CDS
Click for details
no information
Graphical view
2653
TAGAGAAAACAGCACAGCAAATCAAAGACTTTA
GGGGG
TCT
CTTTGAC
Stop codons
TAG (
2653
),
Signal
GGGGG
(2686 - 2690)
Slippery sequence
CTTTGAC
(2694 - 2700)
Model
+1 prokaryote frameshift signal
FSFinder parameters
Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene
prfB gene
Sequence type
Patial genome
Direction
+ strand
Signal
Match sequences
GGGA AGGG GGAG GGGG AGGAGG GGGGG AGGA
spacer
nt
Signal
Match sequences
CUU,URA,C