Overall information
FSDB ID PP1E0011 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Homo sapiens ornithine decarboxylase antizyme 3 (OAZ3), mRNA. 887 bp mRNA linear PRI 16-APR-2006
Resource [1] Ivanov IP, Rohrwasser A, Terreros DA, Gesteland RF, Atkins JF. Proc Natl Acad Sci U S A. 2000 Apr 25;97(9):4808-13.
Nucleic acid sequence NM_016178
Amino acid sequence
gene
1..887
/gene="OAZ3"
/note="synonyms: OAZ-t, TISP15"
/db_xref="GeneID:51686"
/db_xref="HGNC:8097"
/db_xref="MIM:605138"
CDS Click for details
Graphical view

261
TGACACTCCAGCCCCGTTCCTGCCTCCAGTGC
TCCTGA
GTCC
CTAGTAGGCCTCCAGGAGGGCAAAAGCACCGAGCAGGGTAACCACGACCAGCTTAAAGAACTGTATTCGGCTGGGAACTTGACGGTG
Stop codons TGA (261),
Slippery sequence
TCCTGA (293 - 298)
Spacer GTCC (4 nt)
Stimulatory structure
CTAGTAGGCCTCCAGGAGGGCAAAAGCACCGAGCAGGGTAACCACGACCAGCTTAAAGAACTGTATTCGGCTGGGAACTTGACGGTG (303 - 389)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<