Overall information
FSDB ID EM1V0024 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Human immunodeficiency virus 2, complete genome. 10359 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] Guyader M, Emerman M, Sonigo P, Clavel F, Montagnier L, Alizon M. Nature. 1987 Apr 16-22;326(6114):662-9.
[2] Hatfield DL, Levin JG, Rein A, Oroszlan S. Advances in virus research 41:193-239
Nucleic acid sequence NC_001722
Amino acid sequence
gene
1103..5754
/gene="gag-pol"
/locus_tag="HIV2gp1"
/db_xref="GeneID:1490001"
CDS Click for details
Graphical view

2323
TAGAAGACAGGGCTGCTGGAAGTGTGGCAAGCCAGGACACATCATGGCAAACTGCCCGGAAAGACAGGCAGG
TTTTTTA
GGGT
TGGGCCCACGGGGAAAGAAGCCTCGCAACTTCCCCGTGACCCAAGCCCCTCAGGGGC
Stop codons TAG (2323),
Slippery sequence
TTTTTTA (2395 - 2401)
Spacer GGGT (4 nt)
Stimulatory structure
TGGGCCCACGGGGAAAGAAGCCTCGCAACTTCCCCGTGACCCAAGCCCCTCAGGGGC (2406 - 2462)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<