Overall information
FSDB ID PM1V0050 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Saimiriine herpesvirus 2, complete genome. 112930 bp DNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_001350
Amino acid sequence
gene
49443..50069
/locus_tag="SaHV2gp32"
/db_xref="GeneID:1682511"
CDS Click for details
gene
50015..51340
/locus_tag="SaHV2gp33"
/db_xref="GeneID:1682493"
CDS Click for details
Graphical view

49985
TGACTATAT
TTTAAAA
CGCA
TGAGAGAAACATGGATGTCCACTTTGATAACTGGAGATTCTTGTCAAGACCAGATAAAGTCATAGTACATTTACTGCTCCCACAAAC
Stop codons TGA (49985),
Slippery sequence
TTTAAAA (49994 - 50000)
Spacer CGCA (4 nt)
Stimulatory structure
TGAGAGAAACATGGATGTCCACTTTGATAACTGGAGATTCTTGTCAAGACCAGATAAAGTCATAGTACATTTACTGCTCCCACAAAC (50005 - 50091)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<