Overall information
FSDB ID PM1V0047 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Penaeid shrimp infectious myonecrosis virus, complete genome. 7560 bp ds-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_007915
Amino acid sequence
gene
gag-pol
CDS Click for details
CDS Click for details
Graphical view

4749
TGACAGCAGTCGTCCAGGGATGGACGCAATCACAAAGTTGTGTGCACGAAAGTC
GGGTTTT
ATGA
ATGCCCGTTCCACAGCAATGATGGCACCCAAGACTGGACTCAGCGCTGTTATAGATCAAGCACCAAATACATCTCAAGACTTGATCG
Stop codons TGA (4749),
Slippery sequence
GGGTTTT (4803 - 4809)
Spacer ATGA (4 nt)
Stimulatory structure
ATGCCCGTTCCACAGCAATGATGGCACCCAAGACTGGACTCAGCGCTGTTATAGATCAAGCACCAAATACATCTCAAGACTTGATCG (4814 - 4900)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<