Overall information
FSDB ID EM1V0031 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Avian infectious bronchitis virus pol protein, spike protein, small virion-associated protein, membrane protein, and nucleocapsid protein genes, complete cds. 27608 bp ss-RNA linear VRL 11-FEB-2002
Resource [1] Brierley I, Boursnell ME, Binns MM, Bilimoria B, Blok VC, Brown TD, Inglis SC. EMBO J. 1987 Dec 1;6(12):3779-85.
[2] Brierley I, Digard P, Inglis SC. Cell. 1989 May 19;57(4):537-47.
[3] Brierley I, Rolley NJ, Jenner AJ, Inglis SC. J Mol Biol. 1991 Aug 20;220(4):889-902.
[4] Brierley I, Jenner AJ, Inglis SC. J Mol Biol. 1992 Sep 20;227(2):463-79.
[5] Somogyi P, Jenner AJ, Brierley I, Inglis SC. Mol Cell Biol. 1993 Nov;13(11):6931-40.
[6] Brierley I, Meredith MR, Bloys AJ, Hagervall TG. J Mol Biol. 1997 Jul 18;270(3):360-73.
[7] Liphardt J, Napthine S, Kontos H, Brierley I. J Mol Biol. 1999 May 7;288(3):321-35.
[8] Napthine S, Liphardt J, Bloys A, Routledge S, Brierley I. J Mol Biol. 1999 May 7;288(3):305-20.
Nucleic acid sequence M95169
Amino acid sequence
gene 
orf1A-orf1B
CDS Click for details
CDS Click for details
Graphical view

12339
TAAGAATTA
TTTAAAC
GGGTAC
GGGGTAGCAGTGAGGCTCGGCTGATACCCCTTGCTA
Stop codons TAA (12339),
Slippery sequence
TTTAAAC (12348 - 12354)
Spacer GGGTAC (6 nt)
Stimulatory structure
GGGGTAGCAGTGAGGCTCGGCTGATACCCCTTGCTA (12361 - 12396)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<