Overall information
FSDB ID EM1V0009 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Human coronavirus 229E mRNA for RNA polymerase and proteases. 20580 bp mRNA linear VRL 13-JUL-2001
Resource [1] Herold J, Siddell SG. Nucleic Acids Res. 1993 Dec 25;21(25):5838-42.
Nucleic acid sequence X69721
Amino acid sequence
gene 
293..12550
/gene="ORF1a"
CDS Click for details
gene 
12508..20568
/gene="ORF1b"
Graphical view

12505
TAACAGTTA
TTTAAAC
GAGTC
CGGGGCTCTAGTGCCGCTCGACTAGAGCCCTGTAA

12710
CAGTTATGGACCACGAGCAGTCCATG
Stop codons TAA (12505),
Slippery sequence
TTTAAAC (12514 - 12520)

CAGTTATGGACCACGAGCAGTCCATG (12710 -12735)
Spacer GAGTC (5 nt)
Stimulatory structure
CGGGGCTCTAGTGCCGCTCGACTAGAGCCCTGTAA (12526 - 12560)

CAGTTATGGACCACGAGCAGTCCATG (12710 -12735)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<