Overall information
FSDB ID PM1V0065 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Bacteriophage phiYeO3-12, complete genome. 39600 bp DNA linear PHG 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Pajunen MI, Kiljunen SJ, Soderholm ME, Skurnik M. J Bacteriol. 2001 Mar;183(6):1928-37.
Nucleic acid sequence NC_001271
Amino acid sequence
gene 
21657..22957
/gene="10B"
/locus_tag="phiYeO3-12p42"
/db_xref="GeneID:2641237"
CDS Click for details
Graphical view

22625
TAAGTACGCGATGGGTCACGGCGGTCTGCGTCCAGAAGCTGCTGGCGCTATCGTGCT
CCCAAAG
GTGT
CGGAGTAATTCCCGACCCCACTGGAGTTACGTTAAGTCAAAAGACCATGACGCTTGTTGAGGGTGCATCCCGTGCCCTCACAGGAAC
Stop codons TAA (22625),
Slippery sequence
CCCAAAG (22682 - 22688)
Spacer GTGT (4 nt)
Stimulatory structure
CGGAGTAATTCCCGACCCCACTGGAGTTACGTTAAGTCAAAAGACCATGACGCTTGTTGAGGGTGCATCCCGTGCCCTCACAGGAAC (22693 - 22779)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<