Overall information
FSDB ID EM1V0019 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Mouse hepatitis virus strain MHV-A59 C12 mutant, complete genome. 31357 bp RNA linear VRL 25-JUL-2000
Resource [1] Lee HJ, Shieh CK, Gorbalenya AE, Koonin EV, La Monica N, Tuler J, Bagdzhadzhyan A, Lai MM. Virology. 1991 Feb;180(2):567-82.
Nucleic acid sequence AF029248
Amino acid sequence
gene 
ORF1A
CDS Click for details
Graphical view

13541
TAGCTGTTCCTGTGTAGGCACAGGCTCCCAGTTTCAGTCAAAAGACACGAACTT
TTTAAAC
GGGTT
CGGGGTACAAGTGTAAATGCCCGTCTTGTACCCTGTGCCAGTGGCTTGGACACT
Stop codons TAG (13541),
Slippery sequence
TTTAAAC (13595 - 13601)
Spacer GGGTT (5 nt)
Stimulatory structure
CGGGGTACAAGTGTAAATGCCCGTCTTGTACCCTGTGCCAGTGGCTTGGACACT (13607 - 13660)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene prfB gene
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<