Overall information
FSDB ID EM1V0004 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Turnip yellows virus (BWYV-FL1) genomic RNA. 5641 bp RNA linear VRL 24-APR-2003
Resource [1] Veidt I, Lot H, Leiser M, Scheidecker D, Guilley H, Richards K, Jonard G. Nucleic Acids Res. 1988 Nov 11;16(21):9917-32.
[2] Garcia A, van Duin J, Pleij CW. Nucleic Acids Res. 1993 Feb 11;21(3):401-6.
[3] Su L, Chen L, Egli M, Berger JM, Rich A. Nat Struct Biol. 1999 Mar;6(3):285-92.
Nucleic acid sequence X13063
Amino acid sequence
CDS Click for details
Graphical view

1517
TGAAGACATTTTCTTCGAAAGCAAAGAAGATCTGTC
GGGAAAC
GGAGTG
CGCGGCACCGTCCGCGGAACAAACGG
Stop codons TGA (1517),
Slippery sequence
GGGAAAC (1553 - 1559)
Spacer GGAGTG (6 nt)
Stimulatory structure
CGCGGCACCGTCCGCGGAACAAACGG (1566 - 1591)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<