Overall information
FSDB ID PM1E0013 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition D.ananassae Tom retrotransposon DNA sequence. 7060 bp DNA linear INV 03-AUG-1995
Resource [1] Tanda S, Mullor JL, Corces VG. Mol Cell Biol. 1994 Aug;14(8):5392-401.
[2] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence Z24451
Amino acid sequence
gene 
gag-pol
CDS Click for details
CDS Click for details
Graphical view

2010
TGACGA
AAATTTT
CAGT
CACCAGCCCCGGAAGATACCAATACTTAATAATTACCCACAAGGGTTACGCTCACAAATGTTTGATTGACACAGGATCCACAATCAG
Stop codons TGA (2010),
Slippery sequence
AAATTTT (2016 - 2022)
Spacer CAGT (4 nt)
Stimulatory structure
CACCAGCCCCGGAAGATACCAATACTTAATAATTACCCACAAGGGTTACGCTCACAAATGTTTGATTGACACAGGATCCACAATCAG (2027 - 2113)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<