Overall information
FSDB ID PM1V0038 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Jembrana disease virus, complete genome. 7732 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Chadwick BJ, Coelen RJ, Wilcox GE, Sammels LM, Kertayadnya G. J Gen Virol. 1995 Jul;76 ( Pt 7):1637-50.
Nucleic acid sequence NC_001654
Amino acid sequence
gene
230..4527
/gene="gag-pol"
/locus_tag="Jdvgp1"
/db_xref="GeneID:1497400"
CDS Click for details
Graphical view

1318
TGATGGAGAAGTACAAAGGTGTTATGGATGTGGGAAGCCTGGCCATATAAGAAGGGATTGCAAGAACCAGAAATGTTTCAAATGTGGAAAACCGGGCCACTTACAAAGGAACTGCAAATC
AAAAAAC
GGGAGG
CGCTCCTCTGCCCCTTCTGGGCAGAGGAGCGGATACCATCAGGAGAAG
Stop codons TGA (1318),
Slippery sequence
AAAAAAC (1438 - 1444)
Spacer GGGAGG (6 nt)
Stimulatory structure
CGCTCCTCTGCCCCTTCTGGGCAGAGGAGCGGATACCATCAGGAGAAG (1451 - 1498)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<