Overall information

FSDB ID	PP1P0008	Type	+1 frameshifting
Data	PREDICTED	Kingdom	prokaryota
Definition	Caulobacter crescentus CB15 section 187 of 359 of the complete genome. 13017 bp DNA linear BCT 12-JUN-2002
Resource	[1] Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15. [2] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence		AE005861
Amino acid sequence
gene	complement(2485..3600) /gene="CC1874"
CDS	Click for details complement(2485..3600) /gene="CC1874" /note="identified by match to TIGR protein family HMM TIGR00020" /codon_start=1 /transl_table=11 /product="peptide chain release factor 2" /protein_id="AAK23849.1" /db_xref="GI:13423319" /translation="MSRPLRPTSSSPWDCSGGVFDWDVALRKLDELNARVEDPTLWDR PSEAQAVSRERANLAAKVEAVQSIERDLKDALEYAELAEMESDEDSLNDARAQLKSLK ERAGRAELEALLSGEADGNDCYVEINSGAGGTESCDWAGILLRMYTRWANAHGMTTEL IEETDGDQAGIKSATLLVKGANAYGWLKTEAGVHRLVRISPYDSSARRHTSFASAWVY PVVDDNIEIEINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIAVACQAGRSQH QNREEAWKMLRARLYEAELQKREAAQQALEDQKTDIGWGHQIRSYVLQPYQMVKDLRT NVETSDTQGVLDGDLDAFMAASLAQRVGHTRDGGEAS"

Graphical view

3611 TGATGCGACCGGATGTCGAGGCCGCTGCGGCCGACATCGAGCAGTCCGTGGGACTGCTC AGGAGG CGT CTTTGAC
Stop codons	TGA (3611),
Signal	AGGAGG (3552 - 3547)
Slippery sequence	CTTTGAC (3543 - 3537)

Model

+1 prokaryote frameshift signal

FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

prfB gene

Sequence type

Patial genome

Direction

- strand

Signal

Match sequences

spacer

nt

Signal

Match sequences