Overall information

FSDB ID	EP1V0001	Type	+1 frameshifting
Data	EXPERIMENTAL	Kingdom	viruses
Definition	Bacteriophage PSA complete genome. 37618 bp DNA linear PHG 24-SEP-2003
Resource	[1] Zimmer M, Sattelberger E, Inman RB, Calendar R, Loessner MJ. Mol Microbiol. 2003 Oct;50(1):303-17.
Nucleic acid sequence		AJ312240
Amino acid sequence
gene	3976..5290 /gene="cps"
CDS	Click for details join(3976..5126,5128..5290) /gene="cps" /experiment="experimental evidence, no additional details recorded" /note="ribosomal slippage" /codon_start=1 /transl_table=11 /product="major capsid protein b" /protein_id="CAD88501.1" /db_xref="GI:29788014" /db_xref="GOA:Q858X0" /db_xref="UniProtKB/TrEMBL:Q858X0" /translation="MNNLDKKDSETLNISTAFLNAIKEGATEAEQVTAFTNMAEQIQN NIIAQARKEVNREMNDNNVLASRGANALTSDESKYYNEVIAGNGFAGVTALLPPTVFE RVFEDLTVEHPLLSKINFVNTTATTEWIISVGDVATAWWGPLCAEIKEVLDNGFDKIQ TGMYKLSAYIPVCNAMLDLGPSWLDQYVRTILGEAMALGLEAGIVNGSGKDQPIGMMR DLNNVTAGEHPVKTATPLTDLTPATLATKVMLPLTDNGKKSVSDAILVINPADYWSKI YAATSYMTPQGVWVTGILPVPLEIVQSVAVPVGKAVAGRAKDYFMGIGSEQVIRTSTE YRLLDDETLYYAKQYANGRPKDNSSFLVFDITGLEGSPAIDVNVVNNATPPKPLLNKA GNNYSTMKVVELKEELDKRGITYNTSDLKSDLILKLEEDDLNAGV"

Graphical view

5111 TGAATAACGCGACA CCCT CCGAAA CCCCTGCTGAATAAAGCGGGG
Stop codons	TGA (5111),
Slippery sequence	CCCT (5125 - 5128)
Spacer	CCGAAA (6 nt)
Stimulatory structure	CCCCTGCTGAATAAAGCGGGG (5135 - 5155)
	PREDICTED STRUCTURE Predicted by pknotsRG with the minimum energy option Visualized by PseudoViewer

Model

+1 eukaryote frameshift signal

FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

genes in viruses

Sequence type

Patial genome

Direction

+ strand

Signal

Match sequences

spacer

nt

RNA structure

Stem Pseudoknot
- Stem1	<
- Stem2	<
- Loop1	<
- Loop2	<
- Loop3	<