Overall information
FSDB ID EM1V0011 Type -1 frameshifting
Data EXPERIMENTAL Kingdom Viruses
Definition Mouse mammary tumor virus complete proviral genome. 8805 bp DNA linear VRL 15-OCT-2001
Resource [1] ten Dam E. et al. (1990). Virus Genes 4:121-136.
[2] Chamorro M, Parkin N, Varmus HE. Proc Natl Acad Sci U S A. 1992 Jan 15;89(2):713-7.
[3] Shen LX, Tinoco I Jr. J Mol Biol. 1995 Apr 14;247(5):963-78.
[4] Chen X, Kang H, Shen LX, Chamorro M, Varmus HE, Tinoco I Jr.J Mol Biol. 1996 Jul 26;260(4):479-83.
Nucleic acid sequence AF033807
Amino acid sequence
CDS Click for details
Graphical view

2067
TGAAAATTC
AAAAAAC
TTGTAAA
GGGGCAGTCCCCTAGCCCCGCTCAAAAGGGGGAT
Stop codons TGA (2067),
Slippery sequence
AAAAAAC (2076 - 2082)
Spacer TTGTAAA (7 nt)
Stimulatory structure
GGGGCAGTCCCCTAGCCCCGCTCAAAAGGGGGAT (2090 - 2123)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<