Overall information
FSDB ID EM1P0005 Type -1 frameshifting
Data EXPERIMENTAL Kingdom prokaryota
Definition Rahnella aquatilis insertion sequence IS1222-v1 OrfA (orfA) and OrfB (orfB) genes, complete cds. 1221 bp DNA linear BCT 30-APR-2004
Resource [1] Mejlhede N, Licznar P, Prere MF, Wills NM, Gesteland RF, Atkins JF, Fayet O. J Bacteriol. 2004 May;186(10):3274-7.
Nucleic acid sequence AY528232
Amino acid sequence
gene
72..335
/gene="orfA"
CDS Click for details
gene
362..1192
/gene="orfB"
CDS Click for details
Graphical view

296
TAAGGAGGCGCTTCAGGTGGCTCTGGGG
CGAAAG
TACTGA
CGACAGACCAGAAGCGGGAAGCCGTGATGTTGATGTGTGATGCGACCGGTCTGTCG
Stop codons TAA (296),
Slippery sequence
CGAAAG (324 - 329)
Spacer TACTGA (6 nt)
Stimulatory structure
CGACAGACCAGAAGCGGGAAGCCGTGATGTTGATGTGTGATGCGACCGGTCTGTCG (336 - 391)
PREDICTED STRUCTURE

Referenced structure by J of bacteriology (2004) 186, 3274-3277
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<