Overall information
FSDB ID EM1V0037 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Equine arteritis virus, complete genome. 12704 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] den Boon JA, Snijder EJ, Chirnside ED, de Vries AA, Horzinek MC, Spaan WJ. J Virol. 1991 Jun;65(6):2910-20.
Nucleic acid sequence NC_002532
Amino acid sequence
gene 
225..9751
/gene="1ab"
/locus_tag="EAVgp1"
/db_xref="GeneID:921339"
CDS Click for details
Graphical view

5384
TGAGGCAGTGAATCA
GTTAAAC
TGAGAG
CGCCCCACATCTTTCCCGGCGATGTGGGGCGTCGGACCTTTGCTGACTCTAAAGACAAGGGTTTCGTGG
Stop codons TGA (5384),
Slippery sequence
GTTAAAC (5399 - 5405)
Spacer TGAGAG (6 nt)
Stimulatory structure
CGCCCCACATCTTTCCCGGCGATGTGGGGCGTCGGACCTTTGCTGACTCTAAAGACAAGGGTTTCGTGG (5412 - 5480)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<