Overall information
FSDB ID PM1V0061 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Visna virus, complete genome. 9202 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Braun MJ, Clements JE, Gonda MA. J Virol. 1987 Dec;61(12):4046-54.
Nucleic acid sequence NC_001452
Amino acid sequence
gene 
489..1817
/gene="gag"
/locus_tag="VISNAgp1"
/db_xref="GeneID:1490012"
CDS Click for details
gene 
1703..5008
/gene="pol"
/locus_tag="VISNAgp2"
/db_xref="GeneID:1490013"
CDS Click for details
Graphical view

1688
TAGACAAGGAATAATATGCCATCATTGTGGAAAAAGAGGACATATGCAAAAGGACTGCCGGCAGAAGAAACAGCA
GGGAAAC
AACAGG
AGGGGGCCACGTGTGGTGCCGTCCGCGCCCCCT
Stop codons TAG (1688),
Slippery sequence
GGGAAAC (1763 - 1769)
Spacer AACAGG (6 nt)
Stimulatory structure
AGGGGGCCACGTGTGGTGCCGTCCGCGCCCCCT (1776 - 1808)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<