Overall information
FSDB ID EM1E0001 Type -1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Mus musculus mRNA for Edr protein. 5166 bp mRNA linear ROD 15-NOV-2001
Resource [1] Shigemoto K, Brennan J, Walls E, Watson CJ, Stott D, Rigby PW, Reith AD. Nucleic Acids Res. 2001 Oct 1;29(19):4079-88.
Nucleic acid sequence AJ006464
Amino acid sequence
gene 
433..3358
 /gene="Edr"
Graphical view

1177
TGACGCTGCTGCAAAGCCCGATCCTTCACCCAGAGCCTTGGTGATGCCTCCAAACAGCCAGACCGATCCCACCGAGCCTGTGGGAGGTGCCCGCATGCGCCTGTCCAAGGAAGAAAAGGAGAGACGCCGCAAAATGAATTTGTGTCTCTACTGTGGCAATGGAGGCCATTTCGCCGACACGTGTCCAGCGAAAGCCTCCAAGAATTCGCCGCC
GGGAAAC
TCCCC
GGCCCCGCTGTAGGGGGACCTTCAGCGACAGGGCCAGAACGAATAAGGTCCCCACCCTCCGAGGCTTCGACTCAGC
Stop codons TGA (1177),
Slippery sequence
GGGAAAC (1390 - 1396)
Spacer TCCCC (5 nt)
Stimulatory structure
GGCCCCGCTGTAGGGGGACCTTCAGCGACAGGGCCAGAACGAATAAGGTCCCCACCCTCCGAGGCTTCGACTCAGC (1402 - 1477)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<