Overall information
FSDB ID EM1V0036 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Trichomonas vaginalis virus II capsid protein (cap) gene, complete cds; and RNA-dependent RNA polymerase (pol) gene, partial cds. 4674 bp RNA linear VRL 25-MAY-2001
Resource [1] Bessarab IN, Liu HW, Ip CF, Tai JH. Virology. 2000 Feb 15;267(2):350-9.
Nucleic acid sequence AF127178
Amino acid sequence
gene 
296..2425
/gene="cap"
CDS Click for details
gene 
2302..4605
/gene="pol"
CDS Click for details
Graphical view

2299
TGACGTTTCCAACGGACGGTCACGCGGAAAGATCCTTGTGGTCGTCAACTCACCCCTCAAGACATGCGCTGCCTACCA
GGGCCCC
AGCTT
CGCGCCAAAGCCGGGCAGCGCCATGTGGAACGAATAAACCAATGCGGGGGCAGCGTCATCTATCCGCGCTTGAGCACTGCTCGCG
Stop codons TGA (2299),
Slippery sequence
GGGCCCC (2377 - 2383)
Spacer AGCTT (5 nt)
Stimulatory structure
CGCGCCAAAGCCGGGCAGCGCCATGTGGAACGAATAAACCAATGCGGGGGCAGCGTCATCTATCCGCGCTTGAGCACTGCTCGCG (2389 - 2473)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<