Overall information
FSDB ID PM1E0011 Type -1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Tribolium castaneum A4/Ey Woot retrotransposon, 5' LTR, protease (pol), reverse transcriptase (pol), RNase H (pol), integrase (pol), and gag genes, complete cds. 8630 bp DNA linear INV 17-JUN-2005
Resource [1] Gao X, Havecker ER, Baranov PV, Atkins JF, Voytas DF. RNA. 2003 Dec;9(12):1422-30.
Nucleic acid sequence U09586
Amino acid sequence
gene
3750..5027
/gene="gag"
CDS Click for details
gene
4970..8445
/gene="pol"
CDS Click for details
Graphical view

4967
TGAAACATCACGAAACTCCAAGAATTC
GGGAAAC
GGGG
GCGGAGTACAGGACGGGGCCTAAAGTACTCCGGCCAGCAGCACGGCCCACAAAGCGACAGCAGGAACCAACAATTGAGGACGGGAGA
Stop codons TGA (4967),
Slippery sequence
GGGAAAC (4994 - 5000)
Spacer GGGG (4 nt)
Stimulatory structure
GCGGAGTACAGGACGGGGCCTAAAGTACTCCGGCCAGCAGCACGGCCCACAAAGCGACAGCAGGAACCAACAATTGAGGACGGGAGA (5005 - 5091)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<