4970..7108
/gene="pol"
/note="ORF 2a"
/codon_start=1
/product="protease, reverse transcriptase and RNase H"
/protein_id="AAC47271.1"
/db_xref="GI:805077"
/translation="NITKLQEFGKRGRSTGRGLKYSGQQHGPQSDSRNQQLRTGEKRK
RSTSSQSTEGENDARPRASQVKLNVFSIIKSRAAGNNNIQRVVPEIKIQISQQQSVTA
LLDTGSEVSCISEEVWSKLIETGNKPPTLPVTSIHLRGAIGQRSCQVVIQCYLEIKID
EHLYPVVALVVKNLIKPTILGADWLNEQRAVIDFDNNEILLRNGEKHHSFPFRKTTEI
PPEPEDYVEDLVGHIEVNHSAPITTCNKKQHLESPSALQAKVDPLKIPEAEKRKLIHL
LQEYRCIFSLRPGLTHKYTHEIKLHDKTPFLKRPYPVPFALRPAVDATIQEMLDLGVI
KREASPYASPMTVGKKKDGTVRICLDARMINSKMIADCESPPAADELLRRFHEIRYMS
TIDLRSSYWQIPLSPESRQYTAFLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEV
REFVVNYIDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKSNFIQKEVKFLGHIL
TINGIKADPEKISAIRNFPVPQKTKHVRAFLGLCNFYRKFCARYSAATQDLNKLLRKG
EKWRWGRNEQEAFDRVKDLFLEAVLLRYPDLNKIFYVQTDSSGYGLGAELYQIQEDGS
RGVIAFASRSLRGPELNYTTTEKELLGVIFALHKFRIYIQVTKIIIRTDHQALKFLSR
CRLLSERLTRWTLILGQYDYEIELVKGKGM"