Overall information
FSDB ID PM1V0048 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Porcine hemagglutinating encephalomyelitis virus, complete genome. 30480 bp ss-RNA linear VRL 25-JUL-2006
Resource [1] predicted by FSFinder
[2] Vijgen L, Keyaerts E, Lemey P, Maes P, Van Reeth K, Nauwynck H, Pensaert M, Van Ranst M. J Virol. 2006 Jul;80(14):7270-4.
Nucleic acid sequence NC_007732
Amino acid sequence
gene 
211..21497
/locus_tag="PHEV_gp1"
/db_xref="GeneID:3882095"
CDS Click for details
Graphical view

13335
TTTAAAC
GGGTT
CGGGGTACGAGTGTAGATGCCCGTCTCGTACCCTGTGCCAGTGGTTTATCTACTGATGTAC
Slippery sequence
TTTAAAC (13335 - 13341)
Spacer GGGTT (5 nt)
Stimulatory structure
CGGGGTACGAGTGTAGATGCCCGTCTCGTACCCTGTGCCAGTGGTTTATCTACTGATGTAC (13347 - 13407)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<