Overall information
FSDB ID PM1V0001 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Human astrovirus serotype 2, complete sequence of genomic RNA. 6828 bp ss-RNA linear VRL 08-MAR-1994
Resource [1] Jiang B, Monroe SS, Koonin EV, Stine SE, Glass RI. Proc Natl Acad Sci U S A. 1993 Nov 15;90(22):10539-43.
Nucleic acid sequence L13745
Amino acid sequence
CDS Click for details
Graphical view

2770
TAAATCGAAAAACAAGGC
CCCAAAA
AACTACAAA
GGGCCCCAGAAGACCAAGGGGCCC
Stop codons TAA (2770),
Slippery sequence
CCCAAAA (2788 - 2794)
Spacer AACTACAAA (9 nt)
Stimulatory structure
GGGCCCCAGAAGACCAAGGGGCCC (2804 - 2827)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
2791
AAAAAAC
TACAAA
GGGCCCCAGAAGACCAAGGGGCCC
Slippery sequence
AAAAAAC (2791 - 2797)
Spacer TACAAA (6 nt)
Stimulatory structure
GGGCCCCAGAAGACCAAGGGGCCC (2804 - 2827)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<