Overall information

FSDB ID	PP1P0020	Type	+1 frameshifting
Data	PREDICTED	Kingdom	prokaryota
Definition	Streptococcus pneumoniae TIGR4 section 66 of 194 of the complete genome. 10029 bp DNA linear BCT 31-AUG-2001
Resource	[1] Persson BC, Atkins JF. J Bacteriol. 1998 Jul;180(13):3462-6. [2] Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15. [3] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence		AE007383
Amino acid sequence
gene	1055..2044 /gene="SP0755" /note="This region contains an authentic frame shift and is not the result of a sequencing artifact; identified by match to TIGR protein family HMM TIGR00020; peptide chain release factor 2, authentic frameshift"

Graphical view

998 TAGCTTCTTTCA GGGGG TCT CTTTGAC
Stop codons	TAG (998),
Signal	GGGGG (1010 - 1014)
Slippery sequence	CTTTGAC (1018 - 1024)

Model

+1 prokaryote frameshift signal

FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)

Target gene

prfB gene

Sequence type

Patial genome

Direction

+ strand

Signal

Match sequences

spacer

nt

Signal

Match sequences