Overall information
FSDB ID PP1E0009 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Torpedo marmorata ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 1093 bp mRNA linear VRT 26-SEP-2000
Resource [1] Ivanov IP, Gesteland RF, Atkins JF. Nucleic Acids Res. 2000 Sep 1;28(17):3185-96.
Nucleic acid sequence AF291576
Amino acid sequence
gene
1..1093
/gene="antizyme"
CDS Click for details
Graphical view

126
TGATCAGCGGCCAGGAGAGTAATCCTTTGTGTGGTACCTCTCAGCAACAATACTGCAGGCACCTCGGTCCAGGGCCTCTGTGGTGC
TCCTGA
TGCC
CCTCACCCATCAGTGAAGATCCCGGGTGGGCGAGGGAACGGAAGGGATCACACTCTTGCAGCTCTCTTGCATGCGGATGAG
Stop codons TGA (126),
Slippery sequence
TCCTGA (212 - 217)
Spacer TGCC (4 nt)
Stimulatory structure
CCTCACCCATCAGTGAAGATCCCGGGTGGGCGAGGGAACGGAAGGGATCACACTCTTGCAGCTCTCTTGCATGCGGATGAG (222 - 302)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<