Overall information
FSDB ID PM1V0060 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Turnip rosette virus, complete genome. 4037 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_004553
Amino acid sequence
gene
750..3349
/locus_tag="TRoVgp3"
/db_xref="GeneID:2753513"
CDS Click for details
Graphical view

1718
TGACGGAATTTTCGAAACTCTACCAGTGAGCTC
TTTAAAC
TGCCAGC
GGGCGAGCGACGAGATTGTCTGCTCGCCCTCCTCG
Stop codons TGA (1718),
Slippery sequence
TTTAAAC (1751 - 1757)
Spacer TGCCAGC (7 nt)
Stimulatory structure
GGGCGAGCGACGAGATTGTCTGCTCGCCCTCCTCG (1765 - 1799)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<