Overall information
FSDB ID PM1V0007 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Lactobacillus casei bacteriophage A2 virus, complete genome. 43411 bp DNA linear PHG 21-JUN-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_004112
Amino acid sequence
gene
27998..29365
/locus_tag="A2p36"
/db_xref="GeneID:951694"
CDS Click for details
gene
29362..29904
/locus_tag="A2p37"
/db_xref="GeneID:951680"
CDS Click for details
Graphical view

29200
TAAGTTTGTGGTGCATCATCCGAACCGTATGCAGCCATCAGAAGCAAAAAGTCTCAAAGATTTACAGGAAATTGCCCGCGTTCGGGGTTACAAACCGGGATGGGCTTACTATCAAGC
AAAAAAT
CGCG
GCTTTATTGCCGACAGAAAACGGAGGAAACAAGC
Stop codons TAA (29200),
Slippery sequence
AAAAAAT (29317 - 29323)
Spacer CGCG (4 nt)
Stimulatory structure
GCTTTATTGCCGACAGAAAACGGAGGAAACAAGC (29328 - 29361)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<