Overall information
FSDB ID EP1P0002 Type +1 frameshifting
Data EXPERIMENTAL Kingdom prokaryota
Definition S.typhimurium peptide chain-release-factor 2 (prfB) gene, complete cds, and HerC gene product, 5' end. 1351 bp DNA linear BCT 26-APR-1993
Resource [1] Persson BC, Atkins JF. J Bacteriol. 1998 Jul;180(13):3462-6.
[2] Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15.
[3] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence M38590
Amino acid sequence
gene
join(151..225,227..1249)
/gene="prfB"
CDS Click for details
Graphical view

170
TGAATAACCGCATTCAGGACCTCACGGAACGCACCAACGTTCTTA
GGGGG
TAT
CTTTGAC
Stop codons TGA (170),
Signal
GGGGG (215 - 219)
Slippery sequence
CTTTGAC (223 - 229)
Model +1 prokaryote frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene prfB gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
Signal
Match sequences