Overall information
FSDB ID PM1V0022 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Barley yellow dwarf virus-PAS, complete genome. 5695 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_002160
Amino acid sequence
gene
139..2744
/locus_tag="BYDVgp1"
/db_xref="GeneID:1489887"
CDS Click for details
Graphical view

1143
TGATTCTCA
GGGTTTT
TAGAG
GGGCTCTGTGCCGCCTCCGGTTTTGAAAGTCCCTTTTCTCTATTAAGACTGCCGGAGATTAAGGTCACAGACGGAGCCC
Stop codons TGA (1143),
Slippery sequence
GGGTTTT (1152 - 1158)
Spacer TAGAG (5 nt)
Stimulatory structure
GGGCTCTGTGCCGCCTCCGGTTTTGAAAGTCCCTTTTCTCTATTAAGACTGCCGGAGATTAAGGTCACAGACGGAGCCC (1164 - 1242)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<