Overall information
FSDB ID PM1V0010 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Groundnut rosette virus RNA for orf[1,2,3,4]. 4019 bp RNA linear VRL 30-SEP-1996
Resource [1] predicted by FSFinder
Nucleic acid sequence Z69910
Amino acid sequence
gene
13..870
/gene="orf1"
CDS Click for details
gene
837..2528
/gene="orf2"
Graphical view

834
TGACCTGGCTATCAAGGCCGGGGCACA
AAATTTT
TAGT
TGGGGAAGTGTATGCTAGGTCTGGCGTGGAGACTAAAACAAGGCCCAAGATCCTGTCTCCCCA
Stop codons TGA (834),
Slippery sequence
AAATTTT (861 - 867)
Spacer TAGT (4 nt)
Stimulatory structure
TGGGGAAGTGTATGCTAGGTCTGGCGTGGAGACTAAAACAAGGCCCAAGATCCTGTCTCCCCA (872 - 934)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<