Overall information
FSDB ID PM1V0052 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Simian hemorrhagic fever virus, complete genome. 15717 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] Smith SL, Wang X, Godeny EK. Gene. 1997 Jun 3;191(2):205-10.
Nucleic acid sequence NC_003092
Amino acid sequence
gene 
210..10996
/gene="orf1ab"
/locus_tag="SHFVgp01"
/db_xref="GeneID:921967"
CDS Click for details
Graphical view

6509
TGAAGC
TTTAAAC
TGCTAA
CCGCTGCGGGATGTACCAGTGCTGACCGTAGCGGACTGGTGATTACACTGGATTATGCCAAGATCATCACTCATCATGCGCGG
Stop codons TGA (6509),
Slippery sequence
TTTAAAC (6515 - 6521)
Spacer TGCTAA (6 nt)
Stimulatory structure
CCGCTGCGGGATGTACCAGTGCTGACCGTAGCGGACTGGTGATTACACTGGATTATGCCAAGATCATCACTCATCATGCGCGG (6528 - 6610)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<