Overall information
FSDB ID PM1V0045 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Ovine pulmonary adenocarcinoma virus, complete genome. 7462 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
[2] York DF, Vigne R, Verwoerd DW, Querat G. J Virol. 1992 Aug;66(8):4930-9.
Nucleic acid sequence NC_001494
Amino acid sequence
gene
263..2101
/gene="gag"
/locus_tag="Opavgp1"
/db_xref="GeneID:1490018"
CDS Click for details
gene
1993..2862
/gene="protease"
/locus_tag="Opavgp2"
/db_xref="GeneID:1490019"
CDS Click for details
Graphical view

1879
TAAAAAAGGAAAGCATTGGGCACGAGACTGCCGTTCCAAGACAGATGTTCAAGGCAATCCTTTGCCCCCGGTTTC
GGGAAAC
TGGGT
GAGGGGCCAGCCCCTGGCCCCGAAACAATGTTATGGGGCAACACTGCAGGTTCCAAAAGAACCATTGCAGACCTC
Stop codons TAA (1879),
Slippery sequence
GGGAAAC (1954 - 1960)
Spacer TGGGT (5 nt)
Stimulatory structure
GAGGGGCCAGCCCCTGGCCCCGAAACAATGTTATGGGGCAACACTGCAGGTTCCAAAAGAACCATTGCAGACCTC (1966 - 2040)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<