Overall information
FSDB ID
PP1P0019
Type
+1 frameshifting
Data
PREDICTED
Kingdom
prokaryota
Definition
Staphylococcus aureus clone sabac-7, complete sequence. 53354 bp DNA linear BCT 27-MAR-2002
Resource
[1]
Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15.
[2]
Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence
AC078935
Amino acid sequence
gene
prfB
Graphical view
32327
TAACACAAATTA
GGGGG
TCT
CTTTGAC
Stop codons
TAA (
32327
),
Signal
GGGGG
(32339 - 32343)
Slippery sequence
CTTTGAC
(32347 - 32353)
Model
+1 prokaryote frameshift signal
FSFinder parameters
Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene
prfB gene
Sequence type
Patial genome
Direction
+ strand
Signal
Match sequences
GGGA AGGG GGAG GGGG AGGAGG GGGGG AGGA GGAGG
spacer
nt
Signal
Match sequences
CUU,URA,C