Overall information
FSDB ID PP1E0001 Type +1 frameshifting
Data PREDICTED Kingdom eukaryota
Definition Bombyx mori ornithine decarboxylase antizyme (antizyme) mRNA, complete cds. 858 bp mRNA linear INV 26-SEP-2000
Resource [1] Ivanov IP, Gesteland RF, Atkins JF. Nucleic Acids Res. 2000 Sep 1;28(17):3185-96.
[2] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence AF291575
Amino acid sequence
gene 
1..858
/gene="antizyme"
CDS Click for details
Graphical view

185
TGAGCGCTCCCGGCAGCAAACGCTCAGCTCTGTCGGCTTCGGACGCCGAGTGTTTCTCGCTGTGCCTGGGCGCCGGGCCTCTGTGGTGG
TCCTGA
TGTCCCT
GCTCACGGCTCTGCACCGCCCGGAGGGGTGACCGGCGGGGCTGCGAGC
Stop codons TGA (185),
Slippery sequence
TCCTGA (274 - 279)
Spacer TGTCCCT (7 nt)
Stimulatory structure
GCTCACGGCTCTGCACCGCCCGGAGGGGTGACCGGCGGGGCTGCGAGC (287 - 334)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<