Overall information
FSDB ID PM1V0019 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Avian leukosis virus - RSA, complete genome. 7286 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_001408
Amino acid sequence
gene 
372..2474
/gene="MAp19"
/locus_tag="ALVgp02"
/db_xref="GeneID:1491902"
gene 
2495..5182
/gene="pol"
/locus_tag="ALVgp08"
/db_xref="GeneID:1491910"
CDS Click for details
Graphical view

2414
TAGAGGGAGTATCCTAGGAAGAGATTGTCTGCAGGGCCTAGGGCTCCGCTTGAC
AAATTTA
TAGGGAGG
GCCACTGTTCTTACTGTTGCGCTACATCTGGCTATTCCGCTCAAATGGAAGCCAGACCACACGCCTGTGTGGATTGACCAGT
Stop codons TAG (2414),
Slippery sequence
AAATTTA (2468 - 2474)
Spacer TAGGGAGG (8 nt)
Stimulatory structure
GCCACTGTTCTTACTGTTGCGCTACATCTGGCTATTCCGCTCAAATGGAAGCCAGACCACACGCCTGTGTGGATTGACCAGT (2483 - 2564)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<