Overall information
FSDB ID PM1V0028 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Caprine arthritis-encephalitis virus, complete genome. 9189 bp ss-RNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_001463
Amino acid sequence
gene
512..1858
/gene="gag"
/locus_tag="CaVgp1"
/db_xref="GeneID:1489975"
CDS Click for details
gene
1729..5046
/gene="pol"
/locus_tag="CaVgp2"
/db_xref="GeneID:1489976"
CDS Click for details
Graphical view

1804
GGGAAAC
GGGA
GGAGGGGGATACGTGTGGTGCCGTCCGCTCCTCCTATGGAATAACTTCAGCACCACCTATGGTTCAGGTCCGCATAGGTTCCC
Slippery sequence
GGGAAAC (1804 - 1810)
Spacer GGGA (4 nt)
Stimulatory structure
GGAGGGGGATACGTGTGGTGCCGTCCGCTCCTCCTATGGAATAACTTCAGCACCACCTATGGTTCAGGTCCGCATAGGTTCCC (1815 - 1897)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<