Overall information
FSDB ID PM1V0067 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Mycobacteriophage Catera virus, complete genome. 153766 bp DNA linear PHG 28-JUN-2006
Resource [1] predicted by FSFinder
[2] Hatfull GF, Pedulla ML, Jacobs-Sera D, Cichon PM, Foley A, Ford ME, Gonda RM, Houtz JM, Hryckowian AJ, Kelchner VA, Namburi S, Pajcini KV, Popovich MG, Schleicher DT, Simanek BZ, Smith AL, Zdanowicz GM, Kumar V, Peebles CL, Jacobs WR Jr, Lawrence JG, Hendrix RW. PLoS Genet. 2006 Jun;2(6):e92. Epub 2006 Jun 9.
Nucleic acid sequence NC_008207
Amino acid sequence
gene 
69692..70590
/locus_tag="Caterap127"
/db_xref="GeneID:4156795"
CDS Click for details
Graphical view

70075
TGACGAGGACGAGATCTTCGACAAGAACGTCGAGGCCGTGATGGAGCTCTACCCCATCGTCATCACCCAGATCTACCAGGCCATCATGGATCTGGAGCGCGAGTACGCACAGCTGGCCGTCAAACT
GGGAAAA
CTGTCC
GGCTAGACGCCTCAACTGAACTTGAGATCCGTCTGGCCTACAAGCAGGGACTCCTTACTCAGCC
Stop codons TGA (70075),
Slippery sequence
GGGAAAA (70201 - 70207)
Spacer CTGTCC (6 nt)
Stimulatory structure
GGCTAGACGCCTCAACTGAACTTGAGATCCGTCTGGCCTACAAGCAGGGACTCCTTACTCAGCC (70214 - 70277)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<