Overall information
FSDB ID EP1E0007 Type +1 frameshifting
Data EXPERIMENTAL Kingdom eukaryota
Definition Danio rerio mRNA for ornithine decarboxylase antizyme long isoform, complete cds. 2038 bp mRNA linear VRT 06-JUN-2006
Resource [1] Saito T, Hascilowicz T, Ohkido I, Kikuchi Y, Okamoto H, Hayashi S, Murakami Y, Matsufuji S. Biochem J. 2000 Jan 1;345 Pt 1:99-106.
[2] Ivanov IP, Matsufuji S, Murakami Y, Gesteland RF, Atkins JF. EMBO J. 2000 Apr 17;19(8):1907-17.
Nucleic acid sequence AB017118
Amino acid sequence
gene 
oaz
CDS Click for details
Graphical view

73
TAAACAGTCATTGCTTTGCCCGCGAAAAAGAAGGAAAGAAACAGTGCGAGAGCAGCATCATGGAGGCGCTCAGTTCCAGTATTACCGACAGGATGGCGAGTCCGACTGTATGTTGTAGTAGTACCACTGGTCCAGGGCCTCTGTGGTGC
TCCTGA
TGCC
CCTCACCCACCTCTGAAGATCCCAGGTGGGCGAGGGAACGGAGCACGGGATC
Stop codons TAA (73),
Slippery sequence
TCCTGA (222 - 227)
Spacer TGCC (4 nt)
Stimulatory structure
CCTCACCCACCTCTGAAGATCCCAGGTGGGCGAGGGAACGGAGCACGGGATC (232 - 283)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model +1 eukaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene oaz gene
Sequence type Patial genome
Direction + strand
Signal
Match sequences

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<