Overall information
FSDB ID PP1P0014 Type +1 frameshifting
Data PREDICTED Kingdom prokaryota
Definition Pseudomonas putida KT2440 section 6 of 21 of the complete genome. 301995 bp DNA linear BCT 12-DEC-2002
Resource [1] Baranov PV, Gesteland RF, Atkins JF. EMBO Rep. 2002 Apr;3(4):373-7. Epub 2002 Mar 15.
[2] Baranov PV, Gesteland RF, Atkins JF. Gene. 2002 Mar 20;286(2):187-201.
Nucleic acid sequence AE016779
Amino acid sequence
gene
193553..194648
/gene="prfB"
/locus_tag="PP1495"
/note="This region contains an authentic frame shift and
is not the result of a sequencing artifact; peptide chain
release factor 2, programmed frameshift; similar to
SP:P07012, GB:X13973, GB:M36717, SP:P13489, PID:190848,
PID:307040, and PID:35844; identified by sequence
similarity; putative"
Graphical view

193572
TGAACACCATCAAGGACCTCACCGAGCGTTCCCAGTCAATTC
GGGGG
TAT
CTTTGAC
Stop codons TGA (193572),
Signal
GGGGG (193614 - 193618)
Slippery sequence
CTTTGAC (193622 - 193628)
Model +1 prokaryote frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene prfB gene
Sequence type Patial genome
Direction + strand
Signal
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nt
Signal
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