Overall information
FSDB ID EM1V0006 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Cucurbit aphid-borne yellows virus genomic RNA. 5669 bp RNA linear VRL 18-APR-2005
Resource [1] Guilley H, Wipf-Scheibel C, Richards K, Lecoq H, Jonard G. Virology. 1994 Aug 1;202(2):1012-7.
Nucleic acid sequence X76931
Amino acid sequence
CDS Click for details
Graphical view

1470
TGAATACGAGTC
GGGAAAC
GGGCA
GGCGGCGGCGACCGCCGAAACAACCGC
Stop codons TGA (1470),
Slippery sequence
GGGAAAC (1482 - 1488)
Spacer GGGCA (5 nt)
Stimulatory structure
GGCGGCGGCGACCGCCGAAACAACCGC (1494 - 1520)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions

spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<