Overall information
FSDB ID EM1V0005 Type -1 frameshifting
Data EXPERIMENTAL Kingdom viruses
Definition Cereal yellow dwarf virus - RPV complete genome. 5723 bp ss-RNA linear VRL 19-JUN-2002
Resource [1] Vincent JR, Lister RM, Larkins BA. J Gen Virol. 1991 Oct;72 ( Pt 10):2347-55.
[2] ten Dam EB. (1995). Ph.D.Thesis, Leiden University.
Nucleic acid sequence L25299
Amino acid sequence
CDS Click for details
Graphical view

1655
TAAAAGCGGCATCAACTGGGAAGACATCGAAGACGAGTC
GGGAAAC
GGGAA
GGCGGCGGCGTCCGCCGTAACAAACGC
Stop codons TAA (1655),
Slippery sequence
GGGAAAC (1694 - 1700)
Spacer GGGAA (5 nt)
Stimulatory structure
GGCGGCGGCGTCCGCCGTAACAAACGC (1706 - 1732)

Stimulatory structure from PseudoBase
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

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(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<