Overall information
FSDB ID PM1V0030 Type -1 frameshifting
Data PREDICTED Kingdom viruses
Definition Cestrum yellow leaf curling virus, complete genome. 8253 bp DNA linear VRL 30-MAR-2006
Resource [1] predicted by FSFinder
Nucleic acid sequence NC_004324
Amino acid sequence
gene 
641..1177
/locus_tag="CmYLCVgp2"
/db_xref="GeneID:1732959"
CDS Click for details
gene 
1084..2589
/locus_tag="CmYLCVgp3"
/db_xref="GeneID:1732956"
CDS Click for details
Graphical view

1069
TAGACAAAAGGAAAAATGTCTAACAATAGGAGAAATGTCAGAACTCCTACA
AAATTTG
ATAAAAATA
CCAAAACAATCCAAATATTTGG
Stop codons TAG (1069),
Slippery sequence
AAATTTG (1120 - 1126)
Spacer ATAAAAATA (9 nt)
Stimulatory structure
CCAAAACAATCCAAATATTTGG (1136 - 1157)
PREDICTED STRUCTURE

Predicted by pknotsRG with the minimum energy option
Visualized by PseudoViewer
Model -1 frameshift signal
FSFinder parameters

Run FSFinder
(You can obtain the above result by running FSFinder with the sequence and parameter values. You may have to alternate frames to get the same result.)
Target gene genes in viruses
Sequence type Patial genome
Direction + strand
Pattern
Pattern
Match
Exceptions
spacer

nt
RNA structure
Stem
Pseudoknot
- Stem1 <
- Stem2<
- Loop1<
- Loop2 <
- Loop3<